Neuroanatomical Techniques 
Presentation by
Armin Blesch, Ph.D.
Harvey Karten, M.D.
Objectives 
Neuroanatomical techniques 
History of modern neuroanatomy 
Rudolf  Albert von Kölliker  (1817-1905)
nucleus  of Kölliker (Rexed  lamina X), continuity of axon and neuron 
Heinrich  Wilhelm Gottfried Waldeyer (1837-1921) 
Introduced  the term “neuron”  and “chromosome” 
Camilio  Golgi   (1843-1926)
Golgi  method; Golgi cells;  Golgi apparatus; Golgi  tendon organ; Golgi-Mazzoni  corpuscle 
Santiago  Ramon y Cajal (1852-1934)
Cajal's gold-sublimate method for astrocytes
horizontal  cell of Cajal (Retzius-Cajal cell in cortex
interstitial  nucleus of Cajal
Golgi Stain 
Common immunohistochemical stains 
Golgi: selective random neuron and fibers
Hematoxylin/Eosin: cell stain
Nissl (thionin): cell body stain 
Kluver Barrera: mixed cell fiber stain
Weil: myelinated fiber stain
Acetycholine-esterase
Anterograde and Retrograde Tracing 
Brief History of Tracing 
(Grafstein, 1967)
(Kristensson & Olsson, 1971)
Fink-Heimer stain
(Heimer 1999)
Chromatolysis 
http://cclcm.ccf.org/vm/VM_cases/neuro_cases_PNS_muscle.htm 
Anterograde tracing with radioactive amino acids 
Edwards and Hendrickson 
in: Neuroanatomical tract tracing 
Retrograde labeling of spinal motor neurons with HRP 
Van der Want  et al.1997
Types of tracers 
Application of tracers 
Uptake Mechanisms 
Active uptake:
Passive incorporation: lipophilic substances
Intracellular injection
Transport 
Detection 
Fluorescence
Enzyme reaction: HRP (WGA-HRP, CTB-HRP)
Antibodies e.g. CTB
Streptavidin-HRP conjugate for biotinylated tracers e.g. BDA, biocytin
Lectins and Toxins 
WGA-HRP 
Cholera Toxin beta subunit (CTB) 
Retrograde, anterograde and transganglionic
Detection: antibody, HRP conjugate, conjugated to fluorophor
Application: 1 % aqueous solution, iontophoresis or pressure injection
Different efficiency in labeling among different neuronal populatioins and species
Transganglionic tracing of sensory axons with CTB
PHA-L 
Anterograde tracing with PHA-L 
Gerfen et al. in: 
Neuroanatomical tract tracing 
FITC/RITC 
Fluoresceine isothiocyanate (FITC): green Rhodamine isothiocyanate (RITC): emission >590 nm (red)
Anterograde and retrograde transport
Pressure injection of 1-3% aqueous solution 
Lipophilic Carbocyanine Dyes 
Lipophilic Carbocyanine Dyes 
Labeling of radial glia 
Thanos et al. 2000
Dextran amines 
Biotinylated dextran amine (BDA) 
BDA 
Reiner et al. 2000
Anterograde tracing of corticospinal axons
Biocytin/Neurobiotin 
Application: 5% solution, pressure injection or iontophoresis
Fast degradation-short survival time 2-3 days
Mostly anterograde transport
Requires glutaraldehyde fixation
Retrograde tracers 
All anterograde tracers are partially transported retrogradely
Purely retrograde tracers: 
Fast Blue (FB)
Diamidino Yellow (DiY) 
Microspheres 
Edmund Hollis, UCSD
Scale bar 100 µm 
Fluorogold 
Fluorogold 
Naumann et al. 2000 
Ling Wang, UCSD 
Cell filling 
Viruses 
Choosing the Right Tracer 
Transgenic “Golgi” stains 
GENSAT 
 Objective: generate BAC-transgenic mice expressing GFP or CRE under the control of a gene specific promoter
 In situ Hybridization 
 Emulsion Autoradiograpy
 Double labeling 
Blurton-Jones et al 
Blurton-Jones et al
Multiplex mRNA detection 
Dave Kosman (Ethan Bier and Bill McGinnis labs, UC San Diego) 
http://superfly.ucsd.edu/%7Edavek/images/quad.html
Immunohistochemistry 
 Detection Methods 
 TSA
Neuroanatomical Techniques.PPT 
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